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update tests

update tests #85

Triggered via push December 1, 2023 20:54
Status Failure
Total duration 6m 50s
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CI.yml

on: push
Matrix: test
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6 errors and 14 warnings
Julia nightly - ubuntu-latest - x64 - push
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x86 - push
Process completed with exit code 1.
Julia 1.8 - ubuntu-latest - x64 - push
Process completed with exit code 1.
Julia 1.9 - ubuntu-latest - x64 - push
Process completed with exit code 1.
Julia 1.8 - ubuntu-latest - x86 - push
Process completed with exit code 1.
Julia 1.9 - ubuntu-latest - x86 - push
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x64 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia nightly - ubuntu-latest - x86 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.8 - ubuntu-latest - x64 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.9 - ubuntu-latest - x64 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.8 - ubuntu-latest - x86 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.9 - ubuntu-latest - x86 - push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Utilities/Utilities.jl#L34
reference for 'Differential-expression-analysis' could not be found in src/realLLR.md.
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Utilities/Utilities.jl#L34
reference for 'Differential-expression-analysis' could not be found in src/inference.md.
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Utilities/Utilities.jl#L34
10 docstrings not included in the manual: Findr.generate_test_data :: Union{Tuple{}, Tuple{Any}, Tuple{Any, Any}, Tuple{Any, Any, Any}, NTuple{4, Any}, NTuple{5, Any}, NTuple{6, Any}, NTuple{7, Any}, NTuple{8, Any}} Distributions.fit_mle :: Union{Tuple{T}, Tuple{Type{<:Findr.LBeta}, AbstractArray{T}}} where T<:Real Findr.fit_mixdist_EM :: Union{Tuple{Any, Any}, Tuple{Any, Any, Any}, NTuple{4, Any}} Findr.realLLR_col :: Union{Tuple{T}, Tuple{Array{T}, Vector{T}}} where T<:AbstractFloat Findr.realLLR_col :: Union{Tuple{S}, Tuple{T}, Tuple{Array{T}, Vector{T}, Vector{S}}} where {T<:AbstractFloat, S<:Integer} Findr.realLLR_col :: Union{Tuple{S}, Tuple{T}, Tuple{Array{T}, Vector{S}}} where {T<:AbstractFloat, S<:Integer} Findr.findr :: Union{Tuple{T}, Tuple{Matrix{T}, Array{T}}} where T<:AbstractFloat Findr.findr :: Union{Tuple{R}, Tuple{S}, Tuple{T}, Tuple{Matrix{T}, Array{S}, Matrix{R}}} where {T<:AbstractFloat, S<:Integer, R<:Integer} Findr.fit :: Union{Tuple{T}, Tuple{Type{<:Findr.LBeta}, AbstractArray{T}}} where T<:Real Findr.fit_weighted :: Union{Tuple{T}, Tuple{Type{<:Findr.LBeta}, AbstractArray{T}, StatsBase.AbstractWeights}} where T<:Real These are docstrings in the checked modules (configured with the modules keyword) that are not included in @docs or @autodocs blocks.
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Writers/HTMLWriter.jl#L2081
invalid local link: unresolved path in realLLR.md link.text = 1-element Vector{Any}: "Differential expression analysis" link.url = "@ref"
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Writers/HTMLWriter.jl#L2081
invalid local link: unresolved path in inference.md link.text = 1-element Vector{Any}: "Differential expression analysis" link.url = "@ref"
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Documenter.jl#L799
removing `stable` and linking `stable` to `v0.1.0`.
Documentation: ../../../.julia/packages/Documenter/yf96B/src/Documenter.jl#L799
removing `v0.1` and linking `v0.1` to `v0.1.0`.
Documentation
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/