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Change default outlier rejection for tof data during refinement to mcd. #47

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Mar 13, 2024
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Change default outlier rejection for tof data during refinement to mcd. #47

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3 changes: 3 additions & 0 deletions src/dials/command_line/refine.py
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Original file line number Diff line number Diff line change
Expand Up @@ -291,6 +291,9 @@ def run_dials_refine(experiments, reflections, params):
# Similarly, keep track of sparse to reset that for scan-varying macrocycle
sparse = params.refinement.parameterisation.sparse

if experiments.all_tof_experiments():
print(params.refinement.reflections.outlier)
params.refinement.reflections.outlier.algorithm = "mcd"
if params.n_static_macrocycles == 1:
refiner, reflections, history = run_macrocycle(params, reflections, experiments)
experiments = refiner.get_experiments()
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