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README.md

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README.md

Parts of the code are setup to run on T.Carman's local workstation, and parts are to be run on tcarman@modex.bnl.gov.

Overall workflow is like so:

  1. Update and compile desired versions of PEcAn and dvmdostem.
  2. Update dvmdostem-input-catalog (use dvmdostem update-mirror.sh script).
  3. Run model (via pecan) over the various experiment cases.
  • Adjust pecan xml file(s) for run(s)
  • submit with nohup_wrapper.sh
  • preprocessing (pecan meta analysis) happens on head node
  • model runs are submitted by qsub and happen on other nodes
  • model2netcdf I think runs on head node
  1. run posthoc_easa.R
  • use the ph_nohup_wrapper.sh
  • this does not use qsub - all work is done on head!!
  1. Convert Rdata to csv files using rdata2csv.sh
  2. rsync to local
  • change into ~/Documents/SEL/NGEE_Dec_2018_followup
  • rename (move) the ngee_dhs_runs directory to archive
  • then get the new stuff $ rsync -avz --exclude "*/out/*" --exclude "*/run/*" --exclude="*/yearly_runs/*" modex.bnl.gov:/data/tcarman/ngee_dhs_runs .
  1. run plotting with ppp.py

Cite this code:

DOI