README.md

Parts of the code are setup to run on T.Carman's local workstation, and parts are to be run on tcarman@modex.bnl.gov.

Overall workflow is like so:

0. Update and compile desired versions of PEcAn and dvmdostem.
1. Update dvmdostem-input-catalog (use dvmdostem update-mirror.sh script).
2. Run model (via pecan) over the various experiment cases.

• Adjust pecan xml file(s) for run(s)
• submit with nohup_wrapper.sh
• preprocessing (pecan meta analysis) happens on head node
• model runs are submitted by qsub and happen on other nodes
• model2netcdf I think runs on head node

3. run posthoc_easa.R

• use the ph_nohup_wrapper.sh
• this does not use qsub - all work is done on head!!

4. Convert Rdata to csv files using rdata2csv.sh
5. rsync to local

• change into ~/Documents/SEL/NGEE_Dec_2018_followup
• rename (move) the ngee_dhs_runs directory to archive
• then get the new stuff $ rsync -avz --exclude "*/out/*" --exclude "*/run/*" --exclude="*/yearly_runs/*" modex.bnl.gov:/data/tcarman/ngee_dhs_runs .

6. run plotting with ppp.py

Cite this code: