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tolkit

Tree of Life Kit

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  1. telomeric-identifier telomeric-identifier Public

    Identify and find telomeres, or telomeric repeats in a genome.

    Rust 103 11

  2. gfatk gfatk Public

    A plant organellar Graphical Fragment Assembly toolkit

    Rust 14 2

  3. fasta_windows fasta_windows Public

    A Rust implementation of sliding window stats over fastas.

    Rust 12 2

  4. haplotype-windows haplotype-windows Public

    Calculate SNP density in sliding windows over a VCF.

    Rust 7

  5. fpma fpma Public

    Fast Plant Mito Annotation.

    Rust 7

  6. vcf2msa vcf2msa Public

    Given a VCF and a reference genome, create a multiple sequence alignment of the samples.

    Rust 7

Repositories

Showing 10 of 26 repositories
  • telomeric-identifier Public

    Identify and find telomeres, or telomeric repeats in a genome.

    tolkit/telomeric-identifier’s past year of commit activity
    Rust 103 MIT 11 5 1 Updated Jun 1, 2024
  • gfatk Public

    A plant organellar Graphical Fragment Assembly toolkit

    tolkit/gfatk’s past year of commit activity
    Rust 14 MIT 2 5 0 Updated Mar 19, 2024
  • nemADSQ Public

    A repository containing pipelines for nematode genome assembly, decontamination, scaffolding, and QC

    tolkit/nemADSQ’s past year of commit activity
    Nextflow 1 MIT 3 1 0 Updated Sep 14, 2023
  • fasta_windows Public

    A Rust implementation of sliding window stats over fastas.

    tolkit/fasta_windows’s past year of commit activity
    Rust 12 MIT 2 2 0 Updated Jun 21, 2023
  • containerize-conda Public Forked from grst/containerize-conda

    Turn an existing conda environment into a Singularity container

    tolkit/containerize-conda’s past year of commit activity
    Python 0 13 0 0 Updated Mar 13, 2023
  • gff-stats Public

    Calculate GC4 and GC3 from a gff and a fasta.

    tolkit/gff-stats’s past year of commit activity
    Rust 2 MIT 1 3 0 Updated Feb 2, 2023
  • a-telomeric-repeat-database Public

    A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.

    tolkit/a-telomeric-repeat-database’s past year of commit activity
    Shell 7 1 1 0 Updated Jan 22, 2023
  • tolkein Public

    Tree of Life Kit of Evolutionary Informatics Novelties

    tolkit/tolkein’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Jul 12, 2022
  • otipu_chrom_assem Public

    Scripts and files associated with the chromosomal assembly of O. tipulae manuscript

    tolkit/otipu_chrom_assem’s past year of commit activity
    Shell 0 GPL-3.0 2 0 0 Updated Jul 8, 2022
  • plant-organellome-assembly Public

    Automation of plant organelle assemblies from raw reads.

    tolkit/plant-organellome-assembly’s past year of commit activity
    Python 3 0 0 0 Updated Jun 20, 2022
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