Meta16s - an all-in-one solution for streamlined 16s analyses
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Updated
Aug 12, 2023 - R
Meta16s - an all-in-one solution for streamlined 16s analyses
Analysis of 16S data on the cochineal insect
This website gives an introduction to microbial community analysis.
A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
16S Microbiome Analysis Pipeline. This version written in Nextflow.
Outlines the process of testing for statistical differences in certain taxa by group utilizing the phyloseq, tidyverse, and various statistical packages within R.
A general 16S rDNA sequencing analysis pipeline
Reverse Complement PCR (RC-PCR_ Classification pipeline.
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
low biomass and background artifacts have been the main challenges in the analysis of microbial cell-free DNA (cfDNA) in blood. In this study, we developed a quality-filtering strategy, this pipeline allows us to evaluate and exclude potential contaminations and artifacts
Anchor is a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.
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