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A comprehensive and customizable R package for microbiome analysis.
code to reproduce AIH results
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
Updated
Jul 25, 2024
Python
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
🦠Research project in Bioinformatics Institute 2023-2024
Updated
Aug 16, 2024
Jupyter Notebook
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
Updated
Jun 17, 2018
JavaScript
Updated
May 14, 2019
Python
Updated
Dec 30, 2022
Jupyter Notebook
verificacao da homogeneidade biotica em bioma de restinga de mata atlantica atraves de testes de alfa e beta diversidade para riqueza e abundancia de especies
🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics
Updated
Oct 28, 2024
HTML
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
Updated
May 19, 2024
HTML
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
Updated
Dec 30, 2022
Jupyter Notebook
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
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