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ancestral-sequences

Here are 3 public repositories matching this topic...

phylo42 / sherpas

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

virus recombination subtyping genotyping kmers ancestral-sequences phylo-kmers recombination-detection

Updated Jan 12, 2021
C++

sennettm / Extant_Sequence_Reconstruction_ESR

Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.

evolution cross-validation phylogenetics molecular-evolution likelihood ancestral-sequences ancestral-sequence-reconstruction

Updated Mar 7, 2023
Python

GiovanniMerici / Ancestral-Reconstruction

Ancestral Sequence Reconstruction (ASR)

phylogenetics biochemistry alignment ancestral-inference ancestral-sequences ancestral-sequence-reconstruction

Updated Nov 11, 2024
Jupyter Notebook

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