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bioformats
Here are 8 public repositories matching this topic...
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
workflow pipeline nextflow image-processing spatial stitching registration segmentation image-analysis single-cell microscopy ome-tiff nf-core tma bioformats multiplexed-imaging
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Dec 20, 2024 - Nextflow
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
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Dec 9, 2021 - Python
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
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Jun 24, 2024 - Python
(deprecated) meta-package to import bioformats_jar from scyjava
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May 27, 2022 - Python
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Jun 27, 2022 - Python
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