ciccalab / SIMPLI Star 33 Code Issues Pull requests Discussions SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data. life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis Updated Jul 11, 2023 R
chan-labsite / PCNAdeep Star 10 Code Issues Pull requests Track single cells and profile the cell cycle with PCNA fluorescence images cell-cycle cell-biology bioimage-analysis bioinformatics-tool bioimage-tools Updated Sep 1, 2023 Python
adines / DeepClas4Bio Star 7 Code Issues Pull requests DeepClas4Bio is a project that aims to facilitate the interoperability of bioimaging tools with deep learning frameworks. deep-learning image-processing interoperability bioimage-tools Updated Mar 1, 2023 Python
LaboratoryOpticsBiosciences / bioimageloader Star 6 Code Issues Pull requests Load bioimages for machine learning applications python machine-learning bioinformatics deep-learning dataset bioimage-tools Updated Feb 1, 2023 Python
dmattek / ARCOS-tutorial Star 1 Code Issues Pull requests A Jupyter notebook to identify collective cell signalling in raw microscopy images clustering biology spatial-analysis biological-data-analysis microscopy cell-biology bioimage-analysis bioimage-tools bioimage-infomatics bioimage-worflows Updated Jul 25, 2024 Jupyter Notebook