Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.
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Apr 7, 2024 - Python
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cbioportal
Here are 11 public repositories matching this topic...
cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.
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Dec 2, 2024 - Shell
A repository with easy-to-follow instructions on how to prepare you study data files for upload into cBioportal
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Oct 1, 2024 - Python
Data extraction, transformation and loading pipeline for the Princess Maxima Center
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Nov 1, 2023 - Python
This repository contains all machine learning and statistical models used to analyze the landscape of colorectal cancer.
machine-learning
genomics
cancer
cbioportal
statistical-analysis
cancer-genomics
cancer-research
colorectal-cancer
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Jan 22, 2021 - R
Context to create cBioPortal docker images
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Aug 13, 2018 - Dockerfile
a collection of notebooks containing analysis and visualization methods with publicly available data
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Apr 4, 2023 - Jupyter Notebook
The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.
cancer
cbioportal
tcga
mutations
classification
tcga-data
cancer-research
siamese
signature-capture
siamese-network
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Nov 11, 2024 - Python
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