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chaos-game-representation

Here are 7 public repositories matching this topic...

Rohith-2 / Chaos-Game-Representation_BioSeq

Representation of Bio Sequences via Chaos Game and using the same to find similarities

gui bioinformatics chaos sequence-to-sequence similarity-measurement chaos-game chaos-game-representation streamlit bio-sequences

Updated Jun 19, 2021
Python

skatila / pycgr

Chaos Game Representation

bioinformatics chaos fractal python3 matplotlib chaos-game-representation dna-representation dna-visualization

Updated Dec 17, 2018
Python

DeepthiSudharsan / CGR-for-Sequence-Similarity

(Semester 4) Intelligence of Biological Systems - End Semester Project

bioinformatics chaos-game-representation streamlit covid-19 sequence-similarity fcgr ccgr

Updated Jun 8, 2021
Jupyter Notebook

amarinderthind / CGRphylo

CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.

virus phylogenetic-trees phylogenetics bacteria maximum-likelihood phylogenomics phylogeny crg whole chaos-game chaos-game-representation sars-cov-2 recombinant phylogeny-plots cgrphylo neighbour-joining

Updated Oct 1, 2024
R

ElRakabawi / icgr-py

Integer chaos game representation encoder/decoder in python.

bioinformatics chaos chaos-game chaos-game-representation dna-representation

Updated May 21, 2018
Python

Ebedthan / fastchaos

(Integer) chaos game representation for DNA sequences

rust bioinformatics chaos-game-representation integer-chaos-game-representation

Updated Apr 3, 2024
Rust

MoBensaleh / Genome-Fractal

Program that plays a chaos game to generate a fractal given a genome sequence as input.

c makefile chaos-game-representation genome-sequence

Updated Apr 30, 2024
C

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