Quality Assessment tool for fetal brain MRIs, able to score each volume through a deep learning regression model. Developed using Python3 and Keras/Tensorflow framework.

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

Extract surface meshes from in-utero MRI

A quick "hack" plugin for freesurfer

An app to predict segmented brain MRI images from a given unsegmented brain MRI

Automatic masking of fetal brain images using deep learning

A Chris 'ds' plugin to retrieve file/folders from Amazon S3 service.

A 3D U-Net effective for Brain MRI segmentation

An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images

A GPU-aware matrix multiplier. Useful mainly for testing/benchmarking.

A DS plugin to convert NIfTI input to DICOM output

A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.

A ChRIS DS plugin that can perform somewhat arbitrary (housekeeping) operations on patterns of input directories and files.

A Chris 'ds' plugin to push files/folders in input directory to Amazon S3 service.

A ChRIS plug-in built around the FastSurfer app

An app to convert original and segmented brain images in mgz format to .hdf5 format in axial, sagittal, and coronal plane required for FCNN training

An app that pulses system information periodically.

Count the number of positive-intensity voxels in a masked MRI reconstruction

A plugin app for Freesurfer reconstruction of brain surfaces. Very early WIP