chromatin
Here are 48 public repositories matching this topic...
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
-
Updated
Jul 30, 2024 - Python
CUT&RUN and CUT&Tag data processing and analysis
-
Updated
Feb 18, 2023 - Shell
A cool place to store your Hi-C
-
Updated
Oct 7, 2024 - Python
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
-
Updated
Aug 3, 2023 - Shell
Chromosome polymer simulations and in silico capture experiments
-
Updated
Dec 5, 2023 - Python
Processing, quality control and analysis of GAM datsets
-
Updated
Jun 13, 2023 - Python
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
-
Updated
Aug 4, 2022 - Python
3D Genome Browser
-
Updated
Jan 22, 2022 - JavaScript
dcHiC: Differential compartment analysis for Hi-C datasets
-
Updated
Jan 10, 2024 - R
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
-
Updated
Jul 8, 2024 - Python
A Python implementation for BH-FDR and HiCCUPS
-
Updated
Aug 14, 2023 - Python
Comparison of Hi-C Experiments using Structural Similarity.
-
Updated
Jul 18, 2023 - Python
Scripts to create cartoons of 3D genomes
-
Updated
Feb 27, 2024 - Python
Super-resolution chromatin tracing 2018
-
Updated
Nov 7, 2020 - Jupyter Notebook
Methods for summarizing and visualizing multi-biosample functional genomic annotations
-
Updated
Aug 31, 2023 - Python
Step-by-step instructions and Snakemake pipeline for processing Cut&Run data
-
Updated
Sep 8, 2023 - Python
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
-
Updated
Nov 12, 2020 - R
Statistical Modeling of ChIA-PET interactions
-
Updated
Aug 6, 2018 - Shell
Improve this page
Add a description, image, and links to the chromatin topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the chromatin topic, visit your repo's landing page and select "manage topics."