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compositional-data

Here are 30 public repositories matching this topic...

stefpeschel / NetCoMi

Network construction, analysis, and comparison for microbial compositional data

r r-package network-analysis compositional-data microbiome-data

Updated Dec 10, 2024
R

meringlab / FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

metadata bioinformatics julia metagenomics high-performance-computing microbiome probabilistic-graphical-models co-occurence compositional-data ecological-network

Updated Jun 6, 2024
Julia

JuliaEarth / CoDa.jl

Compositional data analysis in Julia

statistics simplex coda compositions compositional-data compositional-data-analysis

Updated Nov 19, 2024
Julia

boehm-s / fun-php

Functional programming utilities for PHP

functional-programming ramdajs function-composition compositional-data

Updated Aug 12, 2021
PHP

Vision-CAIR / 3DCoMPaT

Official repository for the 3DCoMPaT dataset (ECCV2022 Oral)

computer-vision deep-learning dataset compositional-data

Updated Apr 19, 2023
Jupyter Notebook

ofgulban / compoda

Simplex space operations for compositional data implemented in Python.

simplex barycentric-coordinates compositional-data compositional-data-analysis simplices n-simplex simplex-space

Updated Feb 17, 2022
Python

simhag / Compositional-Pre-Training-for-Semantic-Parsing-with-BERT

Implementation of Semantic Parsing with BERT and compositional pre-training on GeoQuery

natural-language-processing transformer bert semantic-parsing recombination compositional-data

Updated Mar 20, 2019
Scala

lch14forever / beem-static

📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

compositional-data microbial-ecology microbiome-model

Updated Aug 24, 2021
R

mcomas / codapack

statistics compositional-data

Updated Oct 3, 2024
Java

mpascariu / CoDa

Forecast mortality using Compositional Data Lee-Carter model - R Package

demography compositional-data mortality-forecasting lee-carter

Updated Dec 4, 2018
R

Japal / zCompositions

Imputation of zeros, nondetects and missing data in compositional data sets

missing-data r-package compositional-data censored-data imputation-methods nondetection

Updated Jun 19, 2024
R

nphdang / DeepCoDA

Deep learning for personalized interpretability for compositional health data

machine-learning medicine deep-learning classification attention-mechanism health-data compositional-data interpretable-deep-learning explainable-ai explainable-ml interpretable-machine-learning

Updated Apr 18, 2022
Python

nexus

tesselle / nexus

🌐 Sourcing Archaeological Materials by Chemical Composition

r-package archaeology archaeological-science compositional-data archaeometry provenance-studies

Updated Dec 18, 2024
R

tystan / simplexity

Hopefully taking out the complexity of using the simplex: functions to generate, manipulate and plot data on the simplex

r simplex plotting compositional-data

Updated Dec 11, 2024
R

avisionh / analysis-structuralbreak

Practical introduction to modelling and testing for structural breaks in time-series data.

time-series stl compositional-data chow-test structural-break-test

Updated Dec 8, 2022

FrederickHuangLin / SECOM-Code-Archive

Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.

correlation sequencing microbiome compositional-data ancom ancom-bc

Updated Jul 8, 2022
HTML

kkdey / dash

Dirichlet adaptive shrinkage for compositional data

smoothing shrinkage-estimator compositional-statistics compositional-data dirichlet-distribution

Updated Jan 19, 2018
R

kkdey / dashr

R package for Dirichlet adaptive shrinkage and smoothing

smoothing adaptive-learning shrinkage-estimator compositional-data shrinkage

Updated Apr 30, 2018
R

seungwoo-stat / 20th-PE-forecast

Forecasting the four-party vote share of the 20th presidential election of Republic of Korea

compositional-data presidential-election

Updated Nov 23, 2023
R

ajmolstad / SpPDCC

R package for estimating sparse and positive definite basis covariance matrices from compositional data

microbiome-analysis compositional-data covariance-matrix-estimation

Updated May 15, 2024
R

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