debruijn-graph
Here are 18 public repositories matching this topic...
Compacted and colored de Bruijn graph construction and querying
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Mar 25, 2024 - Rust
String re-construction using the concepts of de Bruijn graph and Eulerian path.
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Aug 27, 2022 - Jupyter Notebook
Microassembly based somatic variant caller for NGS data
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Jun 23, 2022 - C
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
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Apr 20, 2022 - C++
Shell script for extracting sequences from high-degree nodes in metagenomic assembly graphs
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Mar 14, 2022 - Shell
A fork of the original https://github.com/medvedevgroup/UST tool.
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Mar 3, 2022 - C++
PoC - De Bruijn graph with PGMIndex
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Jan 4, 2022 - C++
Programas usados em BioInformática
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Nov 16, 2021 - Jupyter Notebook
K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours
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Aug 4, 2021 - C++
The phi X 174 bacteriophage is a single-stranded DNA virus that infects Escherichia coli (E. Coli), and the first DNA-based genome to be sequenced. This work was completed by Fred Sanger and his team in 1977. This repository contains simple assembler, different components of it and various error correction techniques for assembling Phi X 174 bac…
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Jul 17, 2021 - Java
This repository contains all the solutions of assignments, starter files and other materials related to this specialization.
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Jan 31, 2021 - Java
Coding problems from course 2 of the Bioinformatics specialization
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Jun 17, 2020 - Python
🃏 creating a cool magic trick with de Bruijn arbitrary sequences
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Dec 3, 2018 - Java
SNP calling pipeline using mccortex
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Jun 10, 2018 - Python
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
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May 27, 2018 - Java
Project for the course of Elementi di Bioinformatica AY 2017/2018
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Mar 2, 2018 - C
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