General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Spatially Explicit Integrated Modeling System --- open-source, cross-platform, and high performance computation

A unified interface for simulations of the Bio-Energetic model on food webs

📦 R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)

An R package for simulating Generalised Management Strategy Evaluation

An educational tool for understanding ecological models of population dynamics

Population genetic model of polygynous biparental inbreeding with no polyandry

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Updated R code for Nunes & Pearson, 2017 in Journal of Biogeography. Nunes, L. A. and Pearson, R. G. (2017), A null biogeographical test for assessing ecological niche evolution. Journal of Biogeography. doi: 10.1111/jbi.12910

Data Analysis with R

Afit software for the analysis of fitness and invasiviness of Aphid insects

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Environnement de simulation multi-agent avec un paradigme écologoiquement valide. Basé sur SimplePlaygrounds.

FR Talk - Teaser of the alien R package (https://github.com/TheoreticalEcosystemEcology/alien)

A Literature Review of Questionable Research Practices in Ecological Modelling for Decisions

Supplemental code for the paper: "Seed dispersal as a search strategy: dynamic and fragmented landscapes select for multi-scale movement strategies in plants" in Movement Ecology 2021

Large-scale implementation (using the Split-Apply-Combine paradigm) of different metabolic adaptation models of species in a 2-species co-culture, based on a Consumer-Resource modeling framework in a Serial-Dilution setup, where species compete for nutrients that are supplied periodically.

R package: Intuitive niche-breadth estimation in multi-trait and phylogenetic dimensions.

Predator-Prey Models using LV models