Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Fixed topology neural network evolution using evolutionary strategy + genetic algorithm

Research platform for the study of the evolution of self-replicating machine code programs metabolizing information.

AI that solves Mastermind game using Genetic Algorithm, implemented in Javascript.

Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations

Evolution/Genetic algorithms (Ruby, Perl, Python)

Python simulation of a single-celled organism

Model, Data, and Analysis for "Negative Niche Construction Favors the Evolution of Cooperation"

Processing human Evolutionary Rate Covariation data

a petri dish population evolves

Individual-based model for the evolution of polyandry and inbreeding

Population genetic model of polygynous biparental inbreeding with no polyandry

Manuscript concerning inbreeding and parental investment, ``Inbreeding parents should invest more resources in fewer offspring''. Includes all history of model development.

Model, configuration, data, analysis, and figures for Resource Abundance and the Critical Transition to Cooperation

A simulation of adapting AI agents written in HTML5 and JavaScript.

Evolution Simulation in XNA Refresh

Generic implementation of genetic algorithm in Java.

game of life with color

Tree evolution simulator

Simple script to color code amino acids according to ConSurf analysis