bcgsc / LINKS Star 73 Code Issues Pull requests ⛓ Long Interval Nucleotide K-mer Scaffolder bloom-filter scaffold long-reads draft-assembly extract-kmer-pairs genome-assemblies scaffold-layout Updated Dec 13, 2023 Perl
andrewgull / MGERT Star 15 Code Issues Pull requests Mobile Genetic Elements Retrieving Tool bioinformatics pipeline bioinformatics-pipeline orf repeatmasker repeatmodeler genome-assemblies flanking-regions mgert-pipeline Updated Nov 26, 2021 Python
michalbukowski / fetch-genomes Star 1 Code Issues Pull requests Download genomes from NCBI GenBank FTP site genbank ncbi-taxonomy ncbi-genbank genomes genome-assemblies Updated Oct 25, 2023 Python
ramadatta / CPgeneProfiler Star 0 Code Issues Pull requests CPgeneProfiler R package repository ncbi-blast genome-assemblies carbapenamase-genes cp-gene assembly-size cocarriage Updated Oct 19, 2020 R