Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
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Updated
Sep 30, 2024 - Python
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Lightweight Flask application for invoking machine learning-based predictive modeling of CRISPR/Cas9 guide efficiency.
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
List of software/websites/databases/other stuff for genome engineering
FlashFry: The rapid CRISPR target site characterization tool
ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
Benchmarking BleTIES with Tetrahymena long read data
Benchmarking BleTIES with simulated long reads
IES retention analysis from PacBio CCS reads
Source code and files for structural network analysis of Cas9 RNP
Meganucleases|ZFNs|TALENs|CRISPR-Cas|BaseEditors|PrimeEditor
A large scale off-target analysis tool for CRISPR/Cas9 genome editing system
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