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Lonardi Bioinformatics Lab, University of California, Riverside

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  1. PGV PGV Public

    Reference-agnostic Representation and Visualization of Pan-genomes

    Python 18 3

  2. Novo_Stitch Novo_Stitch Public

    Novo&Stitch is a genome assembly reconciliation tool based on optical map.

    Python 10 1

  3. DeeplyEssential DeeplyEssential Public

    Deep neural network based prediction model for gene essentiality prediction in microbes

    Python 9 1

  4. Chimericognizer Chimericognizer Public

    Chimericognizer is a novel and accurate chimeric contigs correction tool based on optical maps.

    Python 8 1

  5. OMGS OMGS Public

    OMGS is a fast and accurate genome scaffolding tool with one or multiple Bionano optical maps

    Python 7 1

  6. MSTmap MSTmap Public

    A software tool that builds genetic linkage maps efficiently and accurately

    C++ 5

Repositories

Showing 10 of 28 repositories
  • allegro Public Forked from AmirUCR/allegro

    ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization

    ucrbioinfo/allegro’s past year of commit activity
    C++ 1 MIT 1 0 0 Updated May 31, 2024
  • deepguide_reborn Public

    A reimplementation of the original https://github.com/dDipankar/DeepGuide by Dipankar Ranjan Baisya

    ucrbioinfo/deepguide_reborn’s past year of commit activity
    Python 0 0 0 0 Updated May 6, 2024
  • Fugue Public Forked from AmirUCR/Fugue

    FUGUE is a preprocessing tool for ALLEGRO

    ucrbioinfo/Fugue’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 2, 2024
  • rambler Public
    ucrbioinfo/rambler’s past year of commit activity
    Python 0 0 0 0 Updated Feb 24, 2024
  • dmc_prediction Public
    ucrbioinfo/dmc_prediction’s past year of commit activity
    Python 0 0 0 0 Updated Feb 20, 2024
  • fosinopril Public

    Software for "In Vitro Antibabesial Activity of the ACE Inhibitor Fosinopril Requires Drug Activation by a Parasite Esterase BdFE1 "

    ucrbioinfo/fosinopril’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 21, 2023
  • AMPS Public
    ucrbioinfo/AMPS’s past year of commit activity
    Python 0 0 0 0 Updated Apr 5, 2023
  • GeneLocalizationBduncani Public
    ucrbioinfo/GeneLocalizationBduncani’s past year of commit activity
    Python 0 0 0 0 Updated May 17, 2022
  • DeepGuide Public
    ucrbioinfo/DeepGuide’s past year of commit activity
    0 0 0 0 Updated Jan 24, 2022
  • PGV Public

    Reference-agnostic Representation and Visualization of Pan-genomes

    ucrbioinfo/PGV’s past year of commit activity
    Python 18 MIT 3 3 0 Updated Sep 16, 2021
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