Scripts and data for the CoVaRR-Net Pillar 6 notebook
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Updated
Jul 30, 2024 - HTML
Scripts and data for the CoVaRR-Net Pillar 6 notebook
Nextstrain build for mpox virus
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
mGEMS Genomic epidemiology with mixed samples
A GLUE project developed to support genomic surveillance of Rabies Virus (RABV).
Pathogen NGS Documentary
Official place for proposals and details around monkeypox virus lineage designations
BA.2.86 project with Sigal lab
Automated genomic analysis of SARS-CoV-2 sequence data
Dr. Buqing Yi
Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023
Cluster Investigation & Virus Epidemiology Tool
Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263
Gallery for GEViT Project
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