Toolkit for processing sequences in FASTA/Q formats
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Aug 10, 2024 - C
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sequence-analysis
Here are 177 public repositories matching this topic...
A comprehensive library for computational molecular biology
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Dec 12, 2024 - Python
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics modern fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis cpp20 cpp-concepts
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Dec 19, 2024 - C++
Fast alignment and preprocessing of chromatin profiles
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Nov 22, 2024 - C++
Fast multi-line FASTA/Q reader in several programming languages
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Jun 6, 2021 - C
Cython bindings and Python interface to HMMER3.
bioinformatics python-library python-bindings hidden-markov-model cython-library hmmer sequence-analysis hmmer3
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Nov 5, 2024 - Cython
A fast multiple sequence alignment program.
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Apr 24, 2024 - C
A Python package for CD-HIT, clustering protein or nucleotide sequences.
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Nov 22, 2024 - Python
Open source bioinformatics and computational biology toolbox written in F#.
docker bioinformatics fsharp biology datascience biostatistics amino-acids biocontainers bioinformatics-containers nucleotides dataprocessing sequence-analysis
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May 14, 2024 - F#
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
evolution perl next-generation-sequencing vcf population-genetics dnds-estimation molecular-evolution nucleotide fasta-sequences vcf-files diversity-measurement sequence-analysis dnds natural-selection snp-report nucleotide-diversity evolutionary-parameters substitution-rate nei-gojobori
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Aug 21, 2023 - Perl
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May 16, 2018 - Jupyter Notebook
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
visualization python bioinformatics genomics matplotlib sequence-alignment msa sequence-analysis multiple-sequence-alignment
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Dec 1, 2024 - Python
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
python machine-learning deep-learning prediction feature-selection sequence-analysis bioinformatics-tool automated-modelling biomedical-data-analytics
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Apr 15, 2024 - Python
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
visualization bioinformatics biology longest-common-subsequence sequence-analysis dotplot repetitive-dna pairwise-comparisons
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Nov 26, 2020 - Python
Physicochemical properties, indices and descriptors for amino-acid sequences.
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Sep 9, 2024 - Python
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
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Oct 27, 2024 - Python
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
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Nov 15, 2024
Tools and software library developed by the ONT Applications group
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Jan 22, 2021 - Python
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files
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Aug 7, 2024 - Julia
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