Thesaurus for genetic variants
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Updated
Feb 20, 2018 - Java
Thesaurus for genetic variants
C++ library for genomic region based storage and querying
Filter fastq file based on bed regions
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
BedSect web server source code repository.
Makefile for reference annotations for genes & genomic regions
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
Bedfile perturbation tool
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Phigaro is a scalable command-line tool for predicting phages and prophages
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
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