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Sep 10, 2017 - Shell
k-mer-counting
Here are 18 public repositories matching this topic...
A project submitted as the requirement of the course CSE 549 (Computational Biology), titled as "Efficient Parallelization for KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage". Original serial algorithm available at github.com/srbehera11/KmerEstimate.
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Dec 10, 2018 - C++
Implementación del algoritmo para contar K-mers en una secuencia genética usando GPUs.
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Jul 5, 2021 - C
Assignments in C++
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Jun 27, 2018 - C++
A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.
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Jun 22, 2021 - PHP
fast and lightweight counting of short k-mers
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Sep 30, 2022 - Python
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
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Jul 29, 2020 - Jupyter Notebook
K-mer indexing and querying in RNA-Seq data
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Jan 23, 2019 - C++
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
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Jun 3, 2024 - Python
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
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Jun 12, 2024 - HTML
Python bioinformatics CLI for k-mer counts and de Bruijn graphs
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Aug 2, 2024 - Python
fast and comprehensive k-mer counting package
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Sep 27, 2021 - C++
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
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Nov 30, 2022 - Python
Bioinformatics 101 tool for counting unique k-length substrings in DNA
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Sep 25, 2023 - Rust
A quality control tool for FASTQ files written in rust
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Aug 1, 2024 - Rust
find large indels (in the blind spot between GATK/freebayes and SV callers)
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Dec 3, 2017 - Nim
Estimating k-mer coverage histogram of genomics data
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Dec 13, 2023 - C++
Code examples of fast and simple k-mer counters for tutorial purposes
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Mar 10, 2020 - C++
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