Cloud-native genomic dataframes and batch computing

A comprehensive tutorial about GWAS and PRS

An open-source toolkit for large-scale genomic analysis

Scalable genetics toolkit

GWAS Tutorial for Beginners

Codebook from my GWAS cookbook

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Pan-genome wide association studies

An R package for creating Q-Q and manhattan plots from GWAS results

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

machine learning for genomic variants

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Rare variant test software for next generation sequencing data

Single-cell disease relevance score (scDRS)

SEER, reimplemented in python 🐍🔮

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Python API for comprehensive GWAS analysis using GEMMA