Cloud-native genomic dataframes and batch computing

A comprehensive tutorial about GWAS and PRS

An open-source toolkit for large-scale genomic analysis

Scalable genetics toolkit

Codebook from my GWAS cookbook

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

GWAS Tutorial for Beginners

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

An R package for creating Q-Q and manhattan plots from GWAS results

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

Pan-genome wide association studies

machine learning for genomic variants

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Rare variant test software for next generation sequencing data

Single-cell disease relevance score (scDRS)

SEER, reimplemented in python 🐍🔮

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Python API for comprehensive GWAS analysis using GEMMA