A Python package designed for analyzing the internal degrees of freedom within molecular structures, focusing particularly on membrane proteins. It conducts statistical analyses, providing deep insights into the dynamics and flexibility of molecular interactions. Ideal for finding the most flexible regions within a protein.
TooT-PLM-ionCT: A bioinformatics framework utilizing protein language models for accurate classification of ion channels and ion transporters from membrane proteins.
Documentation
A software for membrane analysis and subtraction in cryo-EM.
The ProLint Webserver
A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane
A software for membrane analysis and subtraction in cryo-EM.
Source code for building the EncoMPASS database
A statistical model to predict heterologous membrane protein expression in E. coli!
Dataset of the "Integrative Modeling of Membrane-associated Protein Assemblies" manuscript
The Website of the Ramiréz Lab
uwseds-group-OPMxplore created by GitHub Classroom
Membrane alpha helix packing and orientation predicrtor
A small Python package to set up electrostatic solvation free energy ("Born energy") calculations of an ion in a membrane protein and calculate the electrostatic free energy with APBS .
Prolint2 is an optimized tool for analyzing and visualizing lipid-protein interactions from molecular dynamics trajectories.
Membrane helix prediction with SVMs
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