MAPle provides three different modules for the analysis of paired-end short read metagenomic data

metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.

Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP

Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"

This project aims do describe and explore the metagenomes of fern species of the genus Azolla.

MAGset is a tool to analyze and compare MAGs of known species

A pipeline for metagenomic analysis

A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

Simple Script for Metagenomics Analysis on NIG Supercomputer (National Institute of Genetics)

Silva OTU count table merger

This pipeline takes the raw metagenomic WGS reads as an input, assemble them, separate the contigs in MAGs, taxonomically classify the MAGs and quantify the ARGs in the MAGs. The pipeline is built using R Shiny and people can run end to end analysis by doing few clicks on the screen.

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur

宏基因组预测

The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes

A metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.

EXPOSIÇÃO AGUDA AO CHUMBO E SUA RELAÇÃO COM ALTERAÇÕES NO STATUS REDOX E DISBIOSE INTESTINAL EM RATOS