MMseqs2: ultra fast and sensitive search and clustering suite
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Updated
Jul 11, 2024 - C
MMseqs2: ultra fast and sensitive search and clustering suite
Website for Koslicki Lab.
🦠📇 Microbial genomes-to-report pipeline
Creation of decontamination pipeline for low-biomass microbiome data
A collection of Galaxy-related training material
MAGset is a tool to analyze and compare MAGs of known species
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
other analyses of diverse topics including food, demography, tourism, mapping, and more
Plots from papers by Jeffrey M. Dick
Estimate metagenomic coverage and sequence diversity
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
Probe capture enrichment sequencing of amoA genes
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Software for monitoring metagenomes using nanopore sequencing reads
HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Read overlap graph based metagenomics binning using Probabilistic Sampling and Geometric Learning
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