Repository containing lists of all published ancient metagenomic (and related) samples and libraries

🌊 Robust workflows for gathering data about your local ocean.

Snakemake based framework for NGS data analysis and management

National workshop on microbiome informatics

En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2

rust pangenome for pangenome alignments

This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.

Host plant rhizosphere microbiome analysis

Building a pipeline for automated 16S analysis from paired short-reads or long-reads

pangenome metagenomics normlization for specific ids

metegnome sequence extractions from MAGs

Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer

This is a python package for analysis of metagenomics data.

An automated pipeline for metagenomic assembly and gene annotation

A simplified version of Kraken, ideal for learning metagenomic analysis. Explore taxonomic classification of DNA sequences and gain insights into microbial communities with this user-friendly educational tool. Perfect for beginners seeking to understand the fundamentals of metagenomics.

analyzing bacterial genome based ontologies and phylogenomics informativeness

An open-source R package containing decontamination pipelines for low-biomass microbiome data

bacterial mategnomes assembly and pangenomes

This repository contains code for generating an interactive sunburst graphic for metagenomic analysis.