Comparative Genomics Toolkit 3
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Updated
Jul 11, 2024 - Python
Comparative Genomics Toolkit 3
A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
phylogenetics tools for linux (and other mostly posix compliant) computers
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
DFOIL: Introgression Testing for Five Taxa
Microbial Genome Circular plotting tool for comparative genomics using Circos
A tool for multiscale forward-time simulation of protein evolution.
Multisample Variant Format ToolKit
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Molecular Evolution Library for Python
phylogenetic analyses informed by deep mutational scanning data
Computational Biology & Bioinformatics Resources
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
MBEToolbox: Matlab toolbox for molecular evolution
A tool for plotting CAFE5 gene family expansion/contraction result
project that enables molecular design and computational screening of small molecules
Janani Ravi's Research Group
Target-enrichment data processing in legumes
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