The codebase of the OpenMS project

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

pyQms, generalized, fast and accurate mass spectrometry data quantification

IsoCor: Isotope Correction for mass spectrometry labeling experiments

A tool for mass spectrometry data analysis.

🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data

Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry