Evaluation framework for oncology foundation models (FMs)

Using a Deep Learning CNN to detect acute lymphoblastic leukemia (ALL) from blood microscopy

VMAT modulation complexity index calculator based on https://github.com/victorgabr/ApertureComplexity

Point of care system for AMPATH clinics

Clinical oncology tumor board decision support system made by the Decider project.

Personalized Network-based Anti-Cancer Therapy Appointment

Clonal reconstruction from HTS data

Crossmapped phenotype ontologies for the oncology domain

Notes and procedures that I wrote as Radiation Physicist Assistant at Cookeville Regional Medical Center

PD-1 Targeted Antibody Discovery Using AI Protein Diffusion

Code from my work as Radiation Physicist Assistant at Cookeville Regional Medical Center

A 3D lesion segmentation method on whole-body PET images including automated quality control.

A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM

Read different files of TSO500 data analysis output and integrate the data.

🧠 | Multimodal Integration of Oncology Data System

A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.

Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies

The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.

Modifications to the "Exeter Oncology Model: Renal Cell Carcinoma edition (EOM-RCC)" as part of STARS work package 3.