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orthomap

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kullrich / orthomap

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orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

python bioinformatics evolution gene-expression transcriptome gene-expression-profiles orthofinder tai scrna-seq-analysis phylostratigraphy scanpy expression-profiles orthomap
  • Updated Nov 20, 2023
  • Python

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