luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).
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Nov 28, 2023 - Python
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pathogenomics
Here are 6 public repositories matching this topic...
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
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Jan 16, 2023 - Python
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
python bash bioinformatics enrichment pathogen metagenomics viruses bacteria probes bioinformatics-scripts sepsis pathogenomics meningitis
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Jun 11, 2024 - Python
Functions for working with NCBI's Pathogen Detection data
bioinformatics r comparative-genomics pangenomics bacterial-genomes pathogenomics pathogen-detection ncbi-pathogens
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Apr 2, 2024 - R
A nextflow workflow to build referenceseeker DBs on the fly
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Oct 5, 2022 - Nextflow
webpage evolution computational-biology drug-repurposing molecular-evolution research-group pathogenomics
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Apr 4, 2019
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