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Jul 28, 2011 - Python
protein-folding
Here are 59 public repositories matching this topic...
Examples for SDAccel 2017.1+ on AWS F1 instances
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Jul 24, 2017 - C++
A Monte-Carlo Code: Sequential Importance Sampling with Pilot-Exploration Resampling (SISPER) Applied to a 2D Protein Folding
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Oct 16, 2017 - Python
A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
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Jan 2, 2019 - Python
Lightning-Fast Template-free Protein Folding based on Predicted Residue Contacts and Secondary Structure
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Aug 15, 2019 - Python
sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
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Mar 11, 2020 - Python
OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling
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May 4, 2020
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Aug 7, 2020 - Jupyter Notebook
A bash script for an automated Rosetta Abinitio folding simulation on an HPC
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Aug 29, 2020 - Shell
Source code and data for fast folding reduction algorithm
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Aug 30, 2020 - Fortran
A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).
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Dec 2, 2020 - Shell
An interactive visual simulator for distance-based protein folding
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Mar 1, 2021 - Java
Hybridized distance- and contact-based hierarchical protein folding
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Mar 1, 2021 - Python
ResNetQA: Improved protein model quality assessment by integrating sequential and pairwise features using deep learning
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May 30, 2021 - Python
Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, as a standalone package for Pytorch
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Aug 3, 2021 - Python
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
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Aug 27, 2021 - Python
The working repository for my bachelor thesis with title : "LOGDQN DEEP REINFORCEMENT LEARNING IMPLEMENTATION FOR SOLVING HYDROPHOBIC-POLAR MODEL PROTEIN FOLDING PROBLEM (Tendean et al, 2020)"
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Sep 21, 2021 - Python
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