MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
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Updated
Jul 10, 2024 - Kotlin
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Clustering of immune receptor repertoires
Post-analysis of immune repertoire sequencing data
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
A RepSeq processing swiss-knife
Comparison of Adaptive Immune Receptor Repertoires
Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
⚙️ A lightweight immune repertoire browser
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
Browser of clonal trees showing evolutionary development of antibodies with ultra-long CDR3s in 50 cattle individuals
Substitution Profiles Using Related Families
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
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