Python library to access Gene Expression Omnibus Database (GEO)
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Jul 27, 2024 - Jupyter Notebook
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rna-sequencing
Here are 40 public repositories matching this topic...
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
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Jun 30, 2024 - Python
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
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Aug 20, 2018 - Groovy
A comprehensive pipeline for RNAseq data analysis
bioinformatics rna-seq gene-expression bioinformatics-pipeline rnaseq rna rna-sequencing rna-seq-analysis bioinformatics-analysis rnaseq-pipeline rnaseq-analysis transcriptome-analysis
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Aug 31, 2024 - Shell
A pipeline to assess the quantification of transcripts.
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Jun 6, 2022 - Python
DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
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Apr 11, 2023 - R
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
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Jun 25, 2024 - R
discovering novel biomarkers in RNA-Seq data with tree-based models and survival analysis
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Feb 9, 2019 - Python
Constructing Neoantigen Vaccine Pipeline with pVACtools
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May 12, 2019 - Shell
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
bioinformatics r nanopore neural-network tensorflow rna-sequencing polya reticulate nanopore-sequencing
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Dec 5, 2024 - R
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
gene-sets big-data tcga rna-sequencing pancancer gsea fmm cohorts big-data-analytics finite-mixture variance-analysis handiling-heteogeneity gene-set-analysis data-discretization
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Aug 13, 2020 - R
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
rna-seq genomics inference ancestry cancer-genomics r-language r-package rna-sequencing whole-genome-sequencing exome-sequencing
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Oct 22, 2024 - R
Annotation and Analysis of Deep Sequencing Variants from CirSeq
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Feb 16, 2018 - R
As part of an overall strategy for improving therapies for childhood cancers, the PPTC seeks to develop models for the types of tumors that will be encountered in early phase clinical testing by establishing patient derived xenografts (PDXs) from high-risk childhood cancers refractory to current standard of care treatments. Genomic profiling of …
classifier clustering fusion rna-sequencing ethnicity-analysis exome-sequencing mutational-signatures
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Dec 11, 2019 - R
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
bioinformatics computational-biology python3 biopython rna-sequencing dna-sequences sequence-alignment bioinformatics-scripts genomic-data-analysis pairwise-alignment bioinformatics-tool genomics-analysis
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Mar 19, 2024 - Python
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
lithium rna-sequencing network-analysis transcriptomics ipsc pathview multi-omics bipolar-disorder drug-response functional-enrichment genome-wide-association-studies pharmacogenetics induced-pluripotent-stem-cells
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Jun 25, 2022 - HTML
QUAlity control for RNA_Seq, a nextflow pipeline
bioinformatics quality-control rna-seq nextflow rna-sequencing rna-seq-analysis rna-seq-pipeline rna-seq-qc
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Jan 31, 2020 - Groovy
RNA-Seq data analysis: whole transcriptome, stranded, dUTP method
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Sep 13, 2021 - R
Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.
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Nov 24, 2020 - Python
Ontology of RNA Sequencing
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Oct 27, 2022 - Makefile
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