Guide and links related to bulk and single-cell RNA-Seq experiments.
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Updated
Oct 3, 2024 - TeX
Guide and links related to bulk and single-cell RNA-Seq experiments.
This project was conducted for the Stanford BioHacks hackathon.
Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.
A comprehensive pipeline for RNAseq data analysis
Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.
A book that discusses topics and contains tutorials relevant to population genomics
This GitHub repo supports a project, led by Delphine Galiana. It explores the innate immune response to viral infections, focusing on the role of plasmacytoid dendritic cells (pDCs) and the impact of alternative splicing in their antiviral response.
Set of classes, codes and scripts which I use for Omics data analysis
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
Breast Cancer Survival Prediction
Splicing assembly for non-model organisms using RNAseq data
Simple Snakemake RNA-Seq pipeline
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
nf-pipeline template for custom data analysis, renders report
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