scripts for scRNA-Seq/scATAC-Seq
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Updated
Jan 27, 2022 - R
scripts for scRNA-Seq/scATAC-Seq
scRNA-seq and scATAC-seq utilities
A R Shiny App for single-cell analysis
Analyzing single cell ATAC data from the brains of drugged rats
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
Benchmarking computational single cell ATAC-seq methods
Workflow to identify functional cis-regulatory regions for each annotated cell type
PIASO: Precise Integration Analysis for Single-cell Omics
Individual cell-based differential transcriptomic analysis across conditions
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Comparison of the performance of AMULET and modified Scrublet on doublet removal in the CEMBA2.0 project.
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Scripts for sincle cell multiome analysis
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
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