MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
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Updated
Sep 26, 2024
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
Fiora is an in silico fragmentation algorithm for small compounds that produces simulated tandem mass spectra (MS/MS). The framework employs a graph neural network to predict bond cleavages and fragment ion intensities via edge prediction. Additionally, Fiora can estimate retention times (RT) and collision cross sections (CCS) of the compounds.
Generate a spectral library for Spectronaut from MS Annika results.
List of all available extensions for our cross-linking search engine MS Annika.
Export MS Annika crosslink results to different formats.
A script and functions to group and validate MS Annika results.
A script to merge and optionally validate several MS Annika search results.
Extensions to use the cross-linking tool Scout with other software.
Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
Extensions for better usability of the cross-linking tool MaXLinker.
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
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