Generate IGV style locus tracks from bigWig files in R
-
Updated
Oct 28, 2024 - R
#
ucsc-browser
Here are 9 public repositories matching this topic...
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis
-
Updated
Nov 18, 2023 - HTML
An install script for the UCSC Genome Browser
-
Updated
Mar 11, 2020 - Shell
Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee
bash r ngs computational-biology data-visualization pca-analysis data-analysis university-course heatmaps biplot motif-discovery ucsc-browser computational-genomics volcano-plot
-
Updated
Jan 25, 2019 - R
Process UCSC multiple alignment database, e.g. extract metadata, choose subset of species.
-
Updated
Mar 11, 2020 - Python
Sequencing data preprocessing
mapping ngs sequencing entrez bigwig chip-seq peak-caller wiggle galaxy-project fastq bedtools ncbi samtools sra ucsc-browser bowtie2 chip-seq-pipelines galaxy-server macs2 bedfile
-
Updated
Jun 18, 2018 - R
An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser
-
Updated
Jun 24, 2021 - Python
An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.
-
Updated
Aug 6, 2024 - CSS
Improve this page
Add a description, image, and links to the ucsc-browser topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the ucsc-browser topic, visit your repo's landing page and select "manage topics."