Hexrays Toolbox - Find code patterns within the Hexrays ctree

genetic variant expressions, annotation, and filtering for great good.

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.

using all the bits for echt rapid variant annotation and filtering

A modular annotation tool for genomic variants

simuG: a general-purpose genome simulator

The Platinum Genomes Truthset

Arioc: GPU-accelerated DNA short-read alignment

Atom is a novel intermediate representation for applications and a standalone tool that is powered by chen.

non-redundant, compressed, journalled, file-based storage for biological sequences

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

A phenotype-based tool for variant prioritization in WES and WGS data

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

visual analysis of your VCF files

a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

provides common tools and lookup tables used primarily by the hgvs and uta packages

High-level API for storing and querying sequence variant data

VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants

R tools to interact with hap.py output