The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
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Updated
Jul 11, 2024 - C++
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
A project to create synthetic vascular networks utilising L-Systems.
Public-facing repository for SLAVV software
Software to analyse the topology of vascular networks.
A rudimentary SOFA application that uses an open-source framework to target real-time robotics simulation, with an emphasis on medical schemas.
Collide vasculature and neurons for fun and profit (?)
Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"
[MICCAI 2024] TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields
Network flow model of the zebrafish trunk vasculature (Control and Wasp Mutant data included) as part of the study presented by Rosa et. al. 2022 (https://journals.biologists.com/dev/article/149/3/dev200195/274169)
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