[MTNN] merge tree neural network refactor #1335
Workflow file for this run
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name: check_code | |
on: | |
push: | |
# triggered on tag pushes with tags beginning with either "v" or "dev" | |
branch-ignore: | |
- '*' | |
tags: | |
- 'v*' | |
- 'dev*' | |
- 'ci*' | |
- 'check*' | |
pull_request: | |
# also triggered by pull requests on the "dev" & "mpi" branches | |
branches: | |
- 'dev' | |
- 'mpi' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
env: | |
PV_TAG: v5.13.0-headless | |
PV_REPO: topology-tool-kit/ttk-paraview | |
jobs: | |
# ----------------------- # | |
# Check source formatting # | |
# ----------------------- # | |
check-formatting: | |
runs-on: ubuntu-22.04 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install latest clang-format | |
run: | | |
sudo apt update | |
sudo apt install -y clang-format | |
- name: Use clang-format to detect formatting issues | |
run: | | |
git ls-files | grep -E "\.cpp$|\.cxx$|\.h$|\.hpp$" | xargs clang-format -n -Werror | |
- name: Check line endings (Unix rather than DOS) | |
run: | | |
! git ls-files | xargs file "{}" ";" | grep CRLF | |
- name: Check files not ending with a newline [NOT ENFORCED] | |
run: | | |
for f in $(git ls-files | grep -Ev 'png$|ico$' ); do | |
test $(tail -c 1 $f | wc -l) -eq 0 && echo $f || true | |
done | |
- name: Check non-standard C++ file extensions [NOT ENFORCED] | |
run: | | |
git ls-files | grep -E "\.cxx$|\.cc$|\.hpp$|\.hxx$|\.txx$|\.tpp$|\.inl$" || true | |
- name: Check for files containing Unicode characters [NOT ENFORCED] | |
run: | | |
git ls-files | xargs file | grep Unicode || true | |
- name: Check for empty files | |
run: | | |
! git ls-files | xargs file | grep empty | |
- name: Check for VTK includes in the base layer | |
run: | | |
! git ls-files \ | |
| grep "core/base" \ | |
| grep -E "\.cpp$|\.cxx$|\.h$|\.hpp$" \ | |
| xargs grep -e "^#include.*vtk" | |
- name: No "using namespace" directive in header files | |
run: | | |
! git ls-files \ | |
| grep -E "\.h$|\.hpp$" \ | |
| xargs grep "using namespace" | |
# ------------- # | |
# Code lint job # | |
# ------------- # | |
lint-code: | |
runs-on: ubuntu-22.04 | |
strategy: | |
matrix: | |
config: | |
- {tidy: true, sa: false, dox: false} | |
- {tidy: false, sa: true, dox: false} | |
- {tidy: false, sa: false, dox: true} | |
env: | |
CMAKE_EXPORT_COMPILE_COMMANDS: ON | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install Ubuntu dependencies | |
run: | | |
sudo apt update | |
# TTK dependencies | |
sudo apt install -y \ | |
libboost-system-dev \ | |
libeigen3-dev \ | |
libgraphviz-dev \ | |
libosmesa-dev \ | |
libsqlite3-dev \ | |
libwebsocketpp-dev \ | |
graphviz \ | |
python3-sklearn \ | |
zlib1g-dev \ | |
libqhull-dev \ | |
doxygen \ | |
clang-tidy | |
- name: Install optional dependencies | |
uses: ./.github/actions/install-deps-unix | |
- name: Fetch TTK-ParaView headless Debian package | |
run: | | |
wget -O ttk-paraview-headless.deb \ | |
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-ubuntu-22.04.deb | |
- name: Install ParaView .deb | |
run: | | |
sudo apt install ./ttk-paraview-headless.deb | |
- name: Create & configure TTK build directory | |
run: | | |
mkdir build | |
cd build | |
cmake \ | |
-DCMAKE_BUILD_TYPE=Debug \ | |
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
-DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
-DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
-DTTK_ENABLE_OPENMP=FALSE \ | |
-DTTK_ENABLE_MPI=TRUE \ | |
-DTTK_BUILD_DOCUMENTATION=TRUE \ | |
$GITHUB_WORKSPACE | |
- name: Use clang-tidy to lint code | |
if: matrix.config.tidy | |
run: | | |
git ls-files \ | |
| grep core \ | |
| grep -E "\.cpp$|\.cxx$" \ | |
| xargs -n1 -P$(nproc) clang-tidy -p build --warnings-as-errors="*" 2> /dev/null | |
- name: Use Clang static analyzer | |
if: matrix.config.sa | |
run: | | |
git ls-files \ | |
| grep core \ | |
| grep -E "\.cpp$|\.cxx$" \ | |
| xargs -n1 -P$(nproc) clang-tidy -p build --checks="-*,clang-analyzer-*" --warnings-as-errors="*" 2> /dev/null | |
- name: Check Doxygen documentation warnings | |
if: matrix.config.dox | |
continue-on-error: true | |
run: | | |
cd build | |
! cmake --build . --target doc |& grep warning | |
# ----------------------- # | |
# Check compiler warnings # | |
# ----------------------- # | |
check-warnings: | |
runs-on: ubuntu-22.04 | |
strategy: | |
matrix: | |
kamikaze: [KAMIKAZE=TRUE, KAMIKAZE=FALSE] | |
omp: [OPENMP=TRUE, OPENMP=FALSE] | |
simplexId: [64BIT_IDS=TRUE, 64BIT_IDS=FALSE] | |
opt: [Debug, Release] | |
mpi: [MPI=TRUE, MPI=FALSE] | |
env: | |
CMAKE_EXPORT_COMPILE_COMMANDS: ON | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install Ubuntu dependencies | |
run: | | |
sudo apt update | |
# TTK dependencies | |
sudo apt install -y \ | |
libboost-system-dev \ | |
libeigen3-dev \ | |
libgraphviz-dev \ | |
libosmesa-dev \ | |
libsqlite3-dev \ | |
libwebsocketpp-dev \ | |
graphviz \ | |
python3-sklearn \ | |
zlib1g-dev \ | |
libqhull-dev \ | |
clang-tools \ | |
libomp-dev | |
- name: Install optional dependencies | |
uses: ./.github/actions/install-deps-unix | |
- name: Fetch TTK-ParaView headless Debian package | |
run: | | |
wget -O ttk-paraview-headless.deb \ | |
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-ubuntu-22.04.deb | |
- name: Install ParaView .deb | |
run: | | |
sudo apt install ./ttk-paraview-headless.deb | |
- name: Create & configure TTK build directory | |
run: | | |
mkdir build | |
cd build | |
cmake \ | |
-DCMAKE_BUILD_TYPE=${{ matrix.opt }} \ | |
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
-DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
-DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
-DTTK_ENABLE_${{ matrix.kamikaze }} \ | |
-DTTK_ENABLE_${{ matrix.omp }} \ | |
-DTTK_ENABLE_${{ matrix.mpi }} \ | |
-DTTK_ENABLE_${{ matrix.simplexId }} \ | |
$GITHUB_WORKSPACE | |
- name: Use clang-check for compiler warnings | |
run: | | |
git ls-files \ | |
| grep core \ | |
| grep -E "\.cpp$|\.cxx$" \ | |
| xargs -n1 -P$(nproc) clang-check -p build --extra-arg=-Werror |