[CI] Re-enable python tests for MacOS #1359
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: test_build | |
on: | |
push: | |
# triggered on commit pushes on the "dev" branch | |
branches: | |
- 'dev' | |
# triggered on tag pushes with tags beginning with either "v" or "dev" | |
tags: | |
- 'v*' | |
- 'dev*' | |
- 'ci*' | |
- 'build*' | |
- 'test*' | |
pull_request: | |
# also triggered by pull requests on the "dev" branch | |
branches: | |
- 'dev' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
env: | |
PV_TAG: v5.13.0-headless | |
PV_REPO: topology-tool-kit/ttk-paraview | |
jobs: | |
# ------------------# | |
# Test Ubuntu build # | |
# ------------------# | |
test-build-ubuntu: | |
runs-on: ${{ matrix.os }} | |
# trigger job when push event on a branch (not on a tag) only for | |
# the "topology-tool-kit/ttk" repository | |
# (pull-requests and tag pushes not affected) | |
if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
strategy: | |
matrix: | |
os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04] | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout TTK source code | |
- name: Install Ubuntu dependencies | |
run: | | |
sudo apt update | |
# TTK dependencies | |
sudo apt install -y \ | |
cargo \ | |
libboost-system-dev \ | |
libeigen3-dev \ | |
libgraphviz-dev \ | |
libosmesa-dev \ | |
libopenmpi-dev \ | |
libsqlite3-dev \ | |
libwebsocketpp-dev \ | |
graphviz \ | |
python3-sklearn \ | |
ninja-build \ | |
zlib1g-dev \ | |
libqhull-dev \ | |
dpkg-dev | |
cargo install sccache --version 0.4.2 --locked | |
echo "PATH=/root/.cargo/bin:$PATH" >> $GITHUB_ENV | |
- name: Install and setup sccache | |
uses: f3d-app/sccache-setup-action@v1 | |
with: | |
key: ${{ matrix.os }}-0 | |
- name: Install optional dependencies | |
uses: ./.github/actions/install-deps-unix | |
# TODO: try to replicate for mac | |
- name: Install Torch | |
shell: bash | |
run: | | |
wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.3.1%2Bcpu.zip | |
unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip | |
sudo cp -R libtorch/* /usr/local/ | |
- name: Fetch TTK-ParaView headless Debian package | |
run: | | |
wget -O ttk-paraview-headless.deb \ | |
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-${{ matrix.os }}.deb | |
- name: Install ParaView .deb | |
run: | | |
sudo apt install ./ttk-paraview-headless.deb | |
- name: Create & configure TTK build directory | |
run: | | |
mkdir build | |
cd build | |
cmake \ | |
-DCMAKE_BUILD_TYPE=Release \ | |
-DCMAKE_C_COMPILER_LAUNCHER=sccache \ | |
-DCMAKE_CXX_COMPILER_LAUNCHER=sccache \ | |
-DCMAKE_INSTALL_PREFIX=/usr \ | |
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
-DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
-DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
-DTTK_ENABLE_KAMIKAZE=TRUE \ | |
-DTTK_ENABLE_MPI=TRUE \ | |
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \ | |
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \ | |
-DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 \ | |
-GNinja \ | |
$GITHUB_WORKSPACE | |
env: | |
CXXFLAGS: -Werror | |
- uses: ammaraskar/gcc-problem-matcher@master | |
- name: Build, install TTK & package it | |
run: | | |
cd build | |
cmake --build . --parallel | |
cpack -G DEB | |
sudo cmake --build . --target install | |
- name: Show sccache results | |
shell: bash | |
run: sccache --show-stats | |
- name: Run TTK tests | |
uses: ./.github/actions/test-ttk-unix | |
- name: Upload TTK .deb package for fast install in tests | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ttk-for-tests-${{ matrix.os }}.deb | |
path: build/ttk.deb | |
# ------------------# | |
# Tests on ttk-data # | |
# ------------------# | |
run-python-screenshots-tests: | |
runs-on: ${{ matrix.os }} | |
needs: test-build-ubuntu | |
strategy: | |
matrix: | |
os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04] | |
testSet: [pyTests, screenshotTests] | |
steps: | |
- name: Install Ubuntu dependencies | |
run: | | |
sudo apt update | |
- name: Install Torch | |
shell: bash | |
run: | | |
wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.3.1%2Bcpu.zip | |
unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip | |
sudo cp -R libtorch/* /usr/local/ | |
- name: Fetch TTK-ParaView headless Debian package | |
run: | | |
wget -O ttk-paraview-headless.deb \ | |
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-${{ matrix.os }}.deb | |
- name: Install ParaView .deb | |
run: | | |
sudo apt install ./ttk-paraview-headless.deb | |
- name: Fetch TTK packages we just built in the test-build-ubuntu job | |
uses: actions/download-artifact@v4.1.7 | |
with: | |
name: ttk-for-tests-${{ matrix.os }}.deb | |
- name: Installing the previously built ttk package | |
run: | | |
sudo apt install ./ttk.deb | |
- uses: actions/checkout@v4 | |
with: | |
repository: "topology-tool-kit/ttk-data" | |
ref: "dev" | |
path: "ttk-data" | |
name: Checkout ttk-data | |
- name: Resample large datasets | |
shell: python3 {0} | |
working-directory: ./ttk-data | |
run: | | |
from paraview import simple | |
for ds in ["ctBones.vti"]: | |
vti = simple.XMLImageDataReader(FileName=ds) | |
rsi = simple.ResampleToImage(Input=vti) | |
rsi.SamplingDimensions = [128, 128, 128] | |
simple.SaveData(ds, rsi) | |
- name: Run ttk-data states [NOT ENFORCED] | |
if: matrix.testSet == 'screenshotTests' | |
id: validate | |
continue-on-error: true | |
run: | | |
VERS=$(hostnamectl | grep "Operating System") | |
# Ubuntu 22.04 OOM killer also kills the parent process... | |
if [[ "$VERS" == *"22.04"* ]] || [[ "$VERS" == *"24.04"* ]]; then | |
rm ttk-data/states/mergeTreeClustering.pvsm | |
rm ttk-data/states/mergeTreePGA.pvsm | |
rm ttk-data/states/mergeTreeTemporalReduction.pvsm | |
rm ttk-data/states/persistentGenerators_darkSky.pvsm | |
fi | |
# remove buggy example | |
# related issue: https://github.com/topology-tool-kit/ttk/issues/1055 | |
rm ttk-data/states/nestedTrackingFromOverlap.py | |
# remove examples which fill up the memory | |
rm ttk-data/states/topologicalOptimization_darkSky.pvsm | |
cd ttk-data/tests | |
mkdir output_screenshots | |
if ! python3 -u validate.py; then | |
if [[ "$VERS" == *"22.04"* ]] || [[ "$VERS" == *"24.04"* ]]; then | |
# weird opacity difference between the two Ubuntus | |
rm -f output_screenshots/clusteringKelvinHelmholtzInstabilities_1.png | |
rm -f output_screenshots/clusteringKelvinHelmholtzInstabilities_2.png | |
fi | |
if [ "$(ls -A output_screenshots)" ]; then | |
tar zcf screenshots.tar.gz output_screenshots | |
false | |
fi | |
fi | |
- name: Upload result screenshots | |
if: steps.validate.outcome == 'failure' && matrix.testSet == 'screenshotTests' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: screenshots-${{ matrix.os }}.tar.gz | |
path: ttk-data/tests/screenshots.tar.gz | |
retention-days: 10 | |
- name: Run ttk-data Python scripts | |
if: matrix.testSet == 'pyTests' | |
run: | | |
cd ttk-data | |
# remove buggy example | |
# related issue: https://github.com/topology-tool-kit/ttk/issues/1055 | |
rm python/nestedTrackingFromOverlap.py | |
# tmp removal of mpi example | |
rm python/mpiExample.py | |
# remove examples which fill up the memory | |
rm python/topologicalOptimization_darkSky.py | |
python3 -u python/run.py | |
- name: Test ttk-data Python scripts results [NOT ENFORCED] | |
if: matrix.testSet == 'pyTests' | |
continue-on-error: true | |
run: | | |
cd ttk-data | |
cat python/res.json | |
diff python/hashes/${{ matrix.os }}.json python/res.json | |
- name: Delete TTK package artifact | |
uses: geekyeggo/delete-artifact@v2 | |
# delete package only once | |
if: matrix.testSet == 'screenshotTests' | |
with: | |
name: ttk-for-tests-${{ matrix.os }}.deb | |
# -----------------# | |
# Test macOS build # | |
# -----------------# | |
test-build-macos: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [macos-13, macos-14, macos-15] | |
if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
env: | |
DYLD_LIBRARY_PATH: /usr/local/lib | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout TTK source code | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.12' | |
- name: Install macOS dependencies | |
run: | | |
# ParaView dependencies | |
brew install --cask xquartz | |
brew install llvm ninja open-mpi | |
# TTK dependencies | |
brew install boost eigen graphviz spectra sqlite zlib numpy qhull | |
- name: Install and setup sccache | |
uses: f3d-app/sccache-setup-action@v1 | |
with: | |
key: macos-0 | |
- name: Install optional dependencies | |
uses: ./.github/actions/install-deps-unix | |
- name: Fetch TTK-ParaView headless macOS binary archive | |
run: | | |
wget -O ttk-paraview-headless.tar.gz \ | |
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-${{ matrix.os }}.tar.gz | |
- name: Install ParaView | |
run: | | |
tar xzf ttk-paraview-headless.tar.gz | |
sudo cp -r ttk-paraview/* /usr/local | |
# pvpython does not embed the correct PYTHONPATH | |
echo "PYTHONPATH=/usr/local/lib/python3.12/site-packages:$PYTHONPATH" >> $GITHUB_ENV | |
pvpython -m pip install --break-system-packages scikit-learn | |
# pvpython is expecting a vtkpython executable at this path | |
sudo ln -s /usr/local/bin/pvpython /Library/Frameworks/Python.framework/Versions/3.12/vtkpython | |
- name: Set compilers as environment variables | |
run: | | |
echo "CC=$(brew --prefix llvm)/bin/clang" >> $GITHUB_ENV | |
echo "CXX=$(brew --prefix llvm)/bin/clang++" >> $GITHUB_ENV | |
- name: Create & configure TTK build directory | |
run: | | |
mkdir build | |
cd build | |
cmake \ | |
-DCMAKE_BUILD_TYPE=Release \ | |
-DCMAKE_C_COMPILER_LAUNCHER=sccache \ | |
-DCMAKE_CXX_COMPILER_LAUNCHER=sccache \ | |
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
-DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
-DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
-DTTK_ENABLE_KAMIKAZE=TRUE \ | |
-DTTK_ENABLE_MPI=TRUE \ | |
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \ | |
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \ | |
-DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 \ | |
-GNinja \ | |
$GITHUB_WORKSPACE | |
env: | |
CXXFLAGS: -Werror | |
- uses: ammaraskar/gcc-problem-matcher@master | |
- name: Build & install TTK | |
run: | | |
cd build | |
cmake --build . --parallel | |
sudo cmake --build . --target install | |
- name: Show sccache results | |
shell: bash | |
run: sccache --show-stats | |
- name: Run TTK tests | |
uses: ./.github/actions/test-ttk-unix | |
- uses: actions/checkout@v4 | |
with: | |
repository: "topology-tool-kit/ttk-data" | |
ref: "dev" | |
path: "ttk-data" | |
name: Checkout ttk-data | |
- name: Run ttk-data states [NOT ENFORCED] | |
id: validate | |
continue-on-error: true | |
run: | | |
# remove buggy example | |
# related issue: https://github.com/topology-tool-kit/ttk/issues/1055 | |
rm ttk-data/states/nestedTrackingFromOverlap.py | |
# remove examples which fill up the memory | |
rm ttk-data/states/topologicalOptimization_darkSky.pvsm | |
# remove examples that take too long to render under mac | |
rm ttk-data/states/persistentGenerators_householdAnalysis.pvsm | |
cd ttk-data/tests | |
mkdir output_screenshots | |
pvpython -u validate.py || (tar zcf screenshots.tar.gz output_screenshots && false) | |
env: | |
PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit | |
- name: Upload result screenshots | |
if: steps.validate.outcome == 'failure' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: screenshots-${{ matrix.os }}.tar.gz | |
path: ttk-data/tests/screenshots.tar.gz | |
retention-days: 10 | |
- name: Run ttk-data Python scripts | |
run: | | |
cd ttk-data | |
# remove buggy example | |
# related issue: https://github.com/topology-tool-kit/ttk/issues/1055 | |
rm python/nestedTrackingFromOverlap.py | |
# tmp removal of mpi example | |
rm python/mpiExample.py | |
# remove examples which fill up the memory | |
rm python/topologicalOptimization_darkSky.py | |
pvpython -u python/run.py | |
env: | |
PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit | |
- name: Test ttk-data Python scripts results [NOT ENFORCED] | |
continue-on-error: true | |
run: | | |
cd ttk-data | |
cat python/res.json | |
diff python/hashes/macOS.json python/res.json | |
# ------------------ # | |
# Test Windows build # | |
# ------------------ # | |
test-build-windows: | |
runs-on: windows-2022 | |
if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
env: | |
PV_DIR: C:\Program Files\TTK-ParaView | |
TTK_DIR: C:\Program Files (x86)\ttk | |
CONDA_ROOT: C:\Miniconda | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout TTK source code | |
- uses: s-weigand/setup-conda@v1 | |
- name: Install dependencies with conda | |
shell: bash | |
run: | | |
conda install -c conda-forge libboost-devel glew eigen spectralib zfp \ | |
sqlite scikit-learn graphviz ninja python=3.10 zlib qhull \ | |
llvm-openmp clangxx=18 | |
# add TTK & ParaView install folders to PATH | |
echo "$PV_DIR/bin" >> $GITHUB_PATH | |
echo "$TTK_DIR/bin" >> $GITHUB_PATH | |
conda info --all | |
- name: Install and setup sccache | |
uses: f3d-app/sccache-setup-action@v1 | |
with: | |
key: windows-0 | |
- name: Remove hosted Python | |
shell: bash | |
run: | | |
rm -rf C:/hostedtoolcache/windows/Python | |
- name: Fetch TTK-ParaView headless Windows installer | |
run: | | |
curl.exe -OL https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless.exe | |
- name: Install ParaView | |
shell: cmd | |
run: | | |
ttk-paraview-headless.exe /S | |
- name: Create & configure TTK build directory | |
shell: cmd | |
run: | | |
set CMAKE_PREFIX_PATH=%CONDA_ROOT%\Library\lib\cmake;%CONDA_ROOT%\Library\share\eigen3\cmake;%CONDA_ROOT%\Library\share\Qull\cmake;%CONDA_ROOT%\Library\cmake;%ProgramFiles%\TTK-ParaView\lib\cmake; | |
set CC=clang-cl.exe | |
set CXX=clang-cl.exe | |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
mkdir build | |
cd build | |
cmake ^ | |
-DCMAKE_BUILD_TYPE=Release ^ | |
-DCMAKE_POLICY_DEFAULT_CMP0092=NEW ^ | |
-DCMAKE_POLICY_DEFAULT_CMP0074=NEW ^ | |
-DBUILD_SHARED_LIBS:BOOL=TRUE ^ | |
-DCMAKE_C_COMPILER_LAUNCHER=sccache ^ | |
-DCMAKE_CXX_COMPILER_LAUNCHER=sccache ^ | |
-DPython3_ROOT_DIR="%CONDA_ROOT%" ^ | |
-DGraphviz_INCLUDE_DIR="%CONDA_ROOT%\Library\include\graphviz" ^ | |
-DGraphviz_CDT_LIBRARY="%CONDA_ROOT%\Library\lib\cdt.lib" ^ | |
-DGraphviz_GVC_LIBRARY="%CONDA_ROOT%\Library\lib\gvc.lib" ^ | |
-DGraphviz_CGRAPH_LIBRARY="%CONDA_ROOT%\Library\lib\cgraph.lib" ^ | |
-DGraphviz_PATHPLAN_LIBRARY="%CONDA_ROOT%\Library\lib\pathplan.lib" ^ | |
-DZLIB_ROOT="%CONDA_ROOT%\Library" ^ | |
-DSQLite3_ROOT="%CONDA_ROOT%\Library" ^ | |
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE ^ | |
-DTTK_BUILD_VTK_WRAPPERS=TRUE ^ | |
-DTTK_BUILD_STANDALONE_APPS=TRUE ^ | |
-DTTK_ENABLE_KAMIKAZE=TRUE ^ | |
-DTTK_ENABLE_OPENMP=TRUE ^ | |
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE ^ | |
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE ^ | |
-DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 ^ | |
-GNinja ^ | |
.. | |
env: | |
CXXFLAGS: -Werror | |
- name: Fix clang-cl OpenMP flags in build.ninja | |
shell: bash | |
run: | | |
sed -i 's/-Xclang -fopenmp/-openmp/' build/build.ninja | |
- name: Build & install TTK | |
shell: cmd | |
run: | | |
cd build | |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
cmake --build . --config Release --parallel --target install | |
- name: Show sccache results | |
shell: bash | |
run: sccache --show-stats | |
- name: Test C++ example | |
shell: cmd | |
run: | | |
set CC=clang-cl.exe | |
set CXX=clang-cl.exe | |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake | |
cd %GITHUB_WORKSPACE%\examples\c++ | |
mkdir build | |
cd build | |
cmake -DCMAKE_BUILD_TYPE=Release -GNinja .. | |
cmake --build . --config Release --parallel | |
ttkExample-c++.exe -i ..\..\data\inputData.off | |
- name: Test VTK-C++ example | |
shell: cmd | |
run: | | |
set CC=clang-cl.exe | |
set CXX=clang-cl.exe | |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake | |
cd %GITHUB_WORKSPACE%\examples\vtk-c++ | |
mkdir build | |
cd build | |
cmake -DCMAKE_BUILD_TYPE=Release -GNinja .. | |
cmake --build . --config Release --parallel | |
ttkExample-vtk-c++.exe -i ..\..\data\inputData.vtu | |
- name: Test Python example [TEMPORARILY NOT ENFORCED] | |
continue-on-error: true | |
shell: cmd | |
run: | | |
set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib | |
cd %GITHUB_WORKSPACE%\examples\python | |
python example.py ..\data\inputData.vtu | |
- name: Test pvpython example | |
shell: cmd | |
run: | | |
set PYTHONPATH=%CONDA_ROOT%\Lib | |
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
cd %GITHUB_WORKSPACE%\examples\pvpython | |
pvpython.exe example.py ..\data\inputData.vtu | |
- name: Test standalone | |
shell: cmd | |
run: | | |
cd %GITHUB_WORKSPACE%\examples\vtk-c++ | |
ttkHelloWorldCmd.exe -i %GITHUB_WORKSPACE%\examples\data\inputData.vtu | |
- uses: actions/checkout@v4 | |
with: | |
repository: "topology-tool-kit/ttk-data" | |
ref: "dev" | |
path: "ttk-data" | |
name: Checkout ttk-data | |
- name: Resample large datasets | |
shell: cmd | |
run: | | |
set PYTHONPATH=%CONDA_ROOT%\Lib | |
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
cd ttk-data | |
pvpython.exe python\resample.py ctBones.vti 128 128 128 ctBones.vti | |
- name: Run ttk-data Python scripts | |
shell: cmd | |
run: | | |
set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib;%CONDA_ROOT%\DLLs | |
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
cd ttk-data | |
rm python/nestedTrackingFromOverlap.py | |
# tmp removal of mpi example | |
rm python/mpiExample.py | |
# remove examples which fill up the memory | |
rm python/topologicalOptimization_darkSky.py | |
pvpython.exe -u python\run.py | |
- name: Test ttk-data Python scripts results [NOT ENFORCED] | |
continue-on-error: true | |
shell: cmd | |
run: | | |
cd ttk-data | |
type python\res.json | |
FC python\hashes\windows.json python\res.json |