swarm version 3.1.5

torognes · Mar 31, 2024 · e8ee6d5 · e8ee6d5
1 parent f9a5cf2
commit e8ee6d5
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Showing 5 changed files with 11 additions and 5 deletions.
diff --git a/CITATION.cff b/CITATION.cff
@@ -23,8 +23,8 @@ authors:
   given-names: "Torbjørn"
   orcid: "https://orcid.org/0000-0002-9329-9974"
 title: "SWARM: A robust and fast clustering method for amplicon-based studies"
-version: 3.1.4
-date-released: 2023-09-20
+version: 3.1.5
+date-released: 2024-03-31
 url: "https://github.com/torognes/swarm"
 preferred-citation:
   type: article

diff --git a/man/swarm.1 b/man/swarm.1
@@ -1,5 +1,5 @@
 .\" ============================================================================
-.TH swarm 1 "March 29, 2024" "version 3.1.5" "USER COMMANDS"
+.TH swarm 1 "March 31, 2024" "version 3.1.5" "USER COMMANDS"
 .\" ============================================================================
 .SH NAME
 swarm \(em find clusters of nearly-identical nucleotide amplicons
@@ -548,7 +548,7 @@ New features and important modifications of \fBswarm\fR (short lived
 or minor bug releases are not mentioned):
 .RS
 .TP
-.BR v3.1.5\~ "released March 29, 2024"
+.BR v3.1.5\~ "released March 31, 2024"
 Version 3.1.5 changes the minimal value for the ceiling option from 8
 megabytes to 40 megabytes, and fixes four minor bugs. Warning, peak
 RSS memory increased by 5 to 10% when \fId\fR >= 2. Version 3.1.5

diff --git a/man/swarm_manual.pdf b/man/swarm_manual.pdf
diff --git a/src/derep.cc b/src/derep.cc
@@ -209,7 +209,13 @@ auto write_swarms_mothur_format(struct Parameters const & parameters,
                                 std::vector<struct bucket> const & hashtable,
                                 std::vector<unsigned int> const & nextseqtab) -> void {
   progress_init("Writing swarms:   ", hashtable.size());
+
+#ifdef _WIN32
+  std::fprintf(parameters.outfile, "swarm_%" PRId64 "\t%llu", parameters.opt_differences, hashtable.size());
+#else
   std::fprintf(parameters.outfile, "swarm_%" PRId64 "\t%lu", parameters.opt_differences, hashtable.size());
+#endif
+
   auto counter = 0U;
 
   for(auto const & cluster: hashtable) {

diff --git a/src/swarm.cc b/src/swarm.cc
@@ -65,7 +65,7 @@ constexpr char PRId64[] = "ld";
 constexpr auto int_max = std::numeric_limits<int>::max();
 constexpr auto int16_max = std::numeric_limits<int16_t>::max();
 static_assert(int_max > int16_max, "Your compiler uses very short integers.");
-const std::string swarm_version {"3.1.4"};
+const std::string swarm_version {"3.1.5"};
 
 
 /* OPTIONS */