SWIPE 2.1.1

Fix for very long headers in the database files.

SWIPE 2.1.0

SWIPE 2.1.0

• Fix for changes to NCBI database format
• Added query description to XML output
• Fixed compilation errors with C++11

SWIPE version 2.0.12

This release fixes a memory leak and a serious memory allocation error that caused a segfault.

SWIPE version 2.0.11

• Resolved a bug that resulted in SWIPE terminating with a fatal internal error in the align function. After recomputing an alignment score > 32768 with 16-bit magnitude, a subsequent 16-bit score computation could be wrong.
• Reduced memory usage when the number of hits asked for using the -b and -v options was higher than the possible maximum number.

SWIPE version 2.0.10

• Resolved an inconsistency in SWIPE with custom non-symmetric matrices. This problem could result in SWIPE terminating with a fatal internal error in the align function.

SWIPE version 2.0.9

• Changed inline assembler syntax (adding register prefix) to adapt to the LLVM clang compiler on Mac
• Improved detection of CPU features (SSSE3 etc) and added alternative code for the search7 function for CPUs with and without SSSE3
• Fixed an inconsistency in the counting of 'positives', i.e. similar but non-identical residues
• Added binaries for Mac, including an openmpi version

SWIPE version 2.0.8

• Removed a bug in computation of the score of alignments with a score higher than 32767.
• Removed a bug in computation of the alignment of sequences that scored higher than 65535.
• No Mac executable this time, but coming soon (need to adapt inline assembler syntax to the LLVM clang compiler).

SWIPE version 2.0.7

• Removed a few memory leaks discovered with Valgrind