Dendrite Dynamics Tracker v0.4.0
·
36 commits
to master
since this release
This new release brings mainly improvements in the statistics export and filtering.
Remove dendrites that intersect with the image borders.
A new parameter on the command window allows for excluding border dendrites.
Tracks and lonely spots will be removed if they have at least one spot touching the border of the specified interval or are outside of it. Visible and invisible tracks and spots are considered.
Export branch velocity in the branch CSV files.
Also we add a first line to write branch birth and a last line to write branch disappearance.
Now the individual branch CSV file looks like this:
Export branch dynamics statistics to CSV.
This takes the shape of a CSV file, with the following columns:
- frame number;
- time for this frame;
- number of new branches appearing in this frame;
- number of branches disappearing in this frame;
- total number of branches alive at that frame.
Short events - a.k.a as dendrites represented by a single spot in a single time-points - are taken into account in these statistics.
The table looks like this:
