namespace update

uc-cdis · Oct 21, 2024 · acf1969 · acf1969
1 parent 94f5b1b
commit acf1969
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Showing 5 changed files with 13 additions and 11 deletions.
diff --git a/gen3/bin/kube-setup-gen3-workflow.sh b/gen3/bin/kube-setup-gen3-workflow.sh
@@ -40,6 +40,7 @@ setup_funnel_infra() {
   gen3_log_info "Funnel cluster IP: $funnelClusterIp"
   tempWorkerConfig="$(mktemp "$XDG_RUNTIME_DIR/funnel-worker-config.yml_XXXXXX")"
   sed "s/FUNNEL_SERVICE_CLUSTER_IP_PLACEHOLDER/$funnelClusterIp/" ${GEN3_HOME}/kube/services/funnel/funnel-worker-config.yml > $tempWorkerConfig
+  sed "s/FUNNEL_SERVICE_NAMESPACE_PLACEHOLDER/$namespace/" $tempWorkerConfig > $tempServerConfig
 
   # set the namespace in the server config
   tempServerConfig="$(mktemp "$XDG_RUNTIME_DIR/funnel-server-config.yml_XXXXXX")"
@@ -87,14 +88,6 @@ setup_funnel_infra() {
   # gen3 s3 attach-bucket-policy "$bucket_name" --read-write --role-name ${username} || true
 }
 
-if ! setup_gen3_workflow_infra; then
-  gen3_log_err "kube-setup-gen3-workflow bailing out - failed to set up gen3-workflow infrastructure"
-  exit 1
-fi
-gen3 roll gen3-workflow
-g3kubectl apply -f "${GEN3_HOME}/kube/services/gen3-workflow/gen3-workflow-service.yaml"
-gen3_log_info "The gen3-workflow service has been deployed onto the kubernetes cluster."
-
 if g3k_manifest_lookup .versions.funnel 2> /dev/null; then
   if ! setup_funnel_infra; then
     gen3_log_err "kube-setup-gen3-workflow bailing out - failed to set up funnel infrastructure"
@@ -106,3 +99,11 @@ if g3k_manifest_lookup .versions.funnel 2> /dev/null; then
 else
   gen3_log_warn "not deploying funnel - no manifest entry for .versions.funnel. The gen3-workflow service may not work!"
 fi
+
+if ! setup_gen3_workflow_infra; then
+  gen3_log_err "kube-setup-gen3-workflow bailing out - failed to set up gen3-workflow infrastructure"
+  exit 1
+fi
+gen3 roll gen3-workflow
+g3kubectl apply -f "${GEN3_HOME}/kube/services/gen3-workflow/gen3-workflow-service.yaml"
+gen3_log_info "The gen3-workflow service has been deployed onto the kubernetes cluster."
diff --git a/kube/services/funnel/funnel-deploy.yaml b/kube/services/funnel/funnel-deploy.yaml
@@ -81,7 +81,7 @@ spec:
       volumes:
         - name: funnel-deployment-storage
           persistentVolumeClaim:
-            claimName: funnel-storage-pvc
+            claimName: storage-pvc
         - name: config-volume
           configMap:
             name: funnel-config
diff --git a/kube/services/funnel/funnel-server-config.yml b/kube/services/funnel/funnel-server-config.yml
@@ -18,7 +18,7 @@ Kubernetes:
     metadata:
       ## DO NOT CHANGE NAME
       name: {{.TaskId}}
-      namespace: {{.Namespace}}
+      namespace: FUNNEL_SERVICE_NAMESPACE_PLACEHOLDER
     spec:
       backoffLimit: 0
       completions: 1

diff --git a/kube/services/funnel/funnel-worker-config.yml b/kube/services/funnel/funnel-worker-config.yml
@@ -8,6 +8,7 @@ Compute: kubernetes
 Kubernetes:
   # The executor used to execute tasks. Available executors: docker, kubernetes
   Executor: "kubernetes"
+  Namespace: FUNNEL_SERVICE_NAMESPACE_PLACEHOLDER
 
 Logger:
   Level: debug

diff --git a/kube/services/funnel/pvc.yml b/kube/services/funnel/pvc.yml
@@ -1,7 +1,7 @@
 apiVersion: v1
 kind: PersistentVolumeClaim
 metadata:
-  name: funnel-storage-pvc
+  name: storage-pvc
 spec:
   storageClassName: standard
   resources: